The way I see it... The cartoonist believes that all Muslims are evil and that the "lone terrorist" thingy is just PC bullshit to cover the fact that every single individual Muslim should be considered an enemy. Then the FBI would like to protect USA from these enemies but Apple (and the traitorous justice system) is stopping them and only the supreme court could order them to let FBI spy on people (more than they already do) but without Scalia the only way to fulfill this plan is to stop Obama from picking a judge (and apparently he also needs to be stopped from releasing the prisoners in Guantanamo bay.)
Note that the only time a Muslim isn't shown to be an evil terrorist in the comic is the panel with the refugees BUT the next to panels show ISIS recruiter and a Muslim who has entered USA and is a terrorist. The kindest conclusion from this is that every refugee should be considered a potential terrorist and the only way to prevent such terrorist from entering among the innocent refugees is to spy on their phones (which Apple is trying to stop from happening.)
